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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18281603_18282454_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18281603 - 18282454
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTATTTCAATT
Flanking Amino Acid:
SKDIMIQFKQYMQNQNVPGN
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
56.8
0.29
1.5
73.18
38

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037962
18278370 - 18298092
19723
ENSAPLT00000018414
18278370 - 18298092
19723
ENSAPLT00000009698
18278370 - 18297569
19200
ENSAPLT00000042369
18279431 - 18298092
18662