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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18284277_18284824_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18284277 - 18284824
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCATTT
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CATGTTTTATTT
Flanking Amino Acid:
LLQHWIEYIKAFGSTIVINP
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.2
72.7
39.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
48.3
-0.1
3.2
74
42.4
Minor BPS
49.1
0.01
1.7
63.49
42

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037962
18278370 - 18298092
19723
ENSAPLT00000018414
18278370 - 18298092
19723
ENSAPLT00000009698
18278370 - 18297569
19200
ENSAPLT00000042369
18279431 - 18298092
18662