About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18286160_18286770_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18286160 - 18286770
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
ATTTTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TAATTCTAAACA
Flanking Amino Acid:
RIITYLDQSTQKPLIATVEK
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
85.7
0.8
0.7
81.4
30
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
65.4
0.48
1.6
73.06
38.6

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009698
18278370 - 18297569
19200
ENSAPLT00000042369
18279431 - 18298092
18662
ENSAPLT00000037962
18278370 - 18298092
19723
ENSAPLT00000018414
18278370 - 18298092
19723