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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18286854_18287124_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18286854 - 18287124
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTTTTGA
5'SS Class:
major
3'SS Sequence:
CTGGTATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATTATTAAAA
Flanking Amino Acid:
EGQRLMQEREVPEYLHHVNK
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
65.6
36.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.1
0.61
0.9
73.4
41
Minor 5ss
40.3
-1.1
2.7
50
46.2
Minor BPS
57.2
0.22
1.7
67.65
37.8

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009698
18278370 - 18297569
19200
ENSAPLT00000042369
18279431 - 18298092
18662
ENSAPLT00000037962
18278370 - 18298092
19723