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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18286854_18287311_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18286854 - 18287311
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGGTATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATTATTAAAA
Flanking Amino Acid:
SLLSMLSDLQVPEYLHHVNK
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.1
0.61
0.9
73.4
41
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
57.2
0.22
1.7
67.65
37.8

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018414
18278370 - 18298092
19723