About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18288487_18288977_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18288487 - 18288977
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCATACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTCTCATACCA
Flanking Amino Acid:
KCWQDHCRQMIMIRSIFLFL
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.3
0.55
0.9
67.3
37.8
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
49
-0
1.9
65.12
41.3

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037962
18278370 - 18298092
19723
ENSAPLT00000018414
18278370 - 18298092
19723
ENSAPLT00000009698
18278370 - 18297569
19200
ENSAPLT00000042369
18279431 - 18298092
18662