About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18294502_18297040_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18294502 - 18297040
Intron Length:
2539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGGC
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ACTTTCTCAAAT
Flanking Amino Acid:
AKKLVIKNFKDKPKLPENYT
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
64.2
40.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.4
0.62
1
75.9
37.7
Minor 5ss
36.3
-1.6
3.4
50.9
45.7
Minor BPS
60.6
0.41
1.6
75.64
40.8

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042369
18279431 - 18298092
18662
ENSAPLT00000037962
18278370 - 18298092
19723
ENSAPLT00000018414
18278370 - 18298092
19723
ENSAPLT00000009698
18278370 - 18297569
19200