About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18297329_18297499_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18297329 - 18297499
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAGCA
5'SS Class:
major
3'SS Sequence:
TGCTCCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAC
U12 Branch Point Sequence:
TCATCACCACCT
Flanking Amino Acid:
AAQEVRPATDGVASSNHHLQ
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
63.3
34.7
Major BPS
65.7
0.39
1.1
67.9
37.7
Major PPT
75.9
0.58
0.8
73.2
31.7
Minor 5ss
30.9
-2.2
3.3
36.8
42.3
Minor BPS
42
-0.5
2.2
63.27
46.1

Associated Gene:

Gene:
CUL4B
Ensembl Gene ID:
ENSAPLG00000009282
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009698
18278370 - 18297569
19200