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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18305952_18306342_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18305952 - 18306342
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTCACTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAAAT
Flanking Amino Acid:
MFKKFDEKENVSN
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66
40.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72.9
0.52
1
68.9
36.7
Minor 5ss
28.4
-2.5
3.1
31.4
36.6
Minor BPS
67.1
0.62
1.5
83.04
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009809
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035758
18305941 - 18332452
26512
ENSAPLT00000010225
18305941 - 18311920
5980