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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18309569_18311686_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18309569 - 18311686
Intron Length:
2118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCGTACTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TAATCTTTAACC
Flanking Amino Acid:
VGVMKMSAEDIEKVNKGIGI
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
68
0.4
1
62.4
38.3
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
80.6
0.94
1
80.63
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009809
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010225
18305941 - 18311920
5980