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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18309569_18331981_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18309569 - 18331981
Intron Length:
22413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCCAC
U12 Branch Point Sequence:
TGCTATTTTACA
Flanking Amino Acid:
VGVMKMSAEDILNLQFV*
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
59.6
0.24
1.2
70.4
35.8
Major PPT
82
0.72
0.9
75.7
37.9
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
52.2
0.06
1.8
64.84
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009809
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035758
18305941 - 18332452
26512