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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18415549_18504022_F

Intron Information:

Intron Rank:
127972
Intron Class:
major
Intron Phase:
Intron Coordinates:
18415549 - 18504022
Intron Length:
88474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
74.8
35.1
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
83.8
0.76
0.8
77.9
34.8
Minor 5ss
32.7
-2
3.1
39.8
40.4
Minor BPS
46.7
-0.1
2.5
78.39
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018954
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041246
18415349 - 18506426
91078