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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_184299_184762_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
184299 - 184762
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
ACATGTATAACG
Flanking Amino Acid:
RLQVPLQLKRESLQKHTKRK
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
68.9
0.47
1
75
30
Major PPT
83.8
0.76
0.7
82
30
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
46.1
-0.4
2
51.18
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026082
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024377
178177 - 195376
17200
ENSAPLT00000022126
178177 - 195376
17200