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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18467374_18501405_F

Intron Information:

Intron Rank:
127973
Intron Class:
major
Intron Phase:
Intron Coordinates:
18467374 - 18501405
Intron Length:
34032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CATCTCTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
88.1
0.86
0.7
80.5
36.7
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
49.3
0.03
1.7
67.26
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018954
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042748
18466937 - 18504063
37127