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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18501589_18504022_F

Intron Information:

Intron Rank:
127968
Intron Class:
major
Intron Phase:
Intron Coordinates:
18501589 - 18504022
Intron Length:
2434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCATA
5'SS Class:
major
3'SS Sequence:
ATTCTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
72.5
38.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
83.8
0.76
0.8
77.9
34.8
Minor 5ss
49.1
-0.1
2.5
66.4
44.7
Minor BPS
46.7
-0.1
2.5
78.39
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018954
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038413
18498584 - 18506426
7843
ENSAPLT00000025701
18501416 - 18506426
5011