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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18501975_18504022_F

Intron Information:

Intron Rank:
127975
Intron Class:
major
Intron Phase:
Intron Coordinates:
18501975 - 18504022
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATATAA
5'SS Class:
major
3'SS Sequence:
ATTCTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
71.9
28.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
83.8
0.76
0.8
77.9
34.8
Minor 5ss
31.9
-2.1
3
38.4
46.6
Minor BPS
46.7
-0.1
2.5
78.39
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018954
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042748
18466937 - 18504063
37127