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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18547133_18556120_F

Intron Information:

Intron Rank:
138461
Intron Class:
major
Intron Phase:
Intron Coordinates:
18547133 - 18556120
Intron Length:
8988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TGCTACAGAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
71.6
0.54
1
72
33.1
Major PPT
83.6
0.76
0.8
77.6
31.1
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
42.6
-0.5
2
55.55
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024546
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033003
18546733 - 18573207
26475