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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1884194_1898408_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1884194 - 1898408
Intron Length:
14215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
ATCTTTCCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
ATCTTTCCGACA
Flanking Amino Acid:
YIASSSGSTAIKKQQQDVLG
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
64.8
41.3
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
73.3
0.52
1
69.4
36.4
Minor 5ss
30.1
-2.3
3.5
41.6
45.3
Minor BPS
45.1
-0.3
1.8
56.68
36.5

Associated Gene:

Gene:
SH3BGRL
Ensembl Gene ID:
ENSAPLG00000022802
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023744
1884149 - 1901021
16873