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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18866471_18867486_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18866471 - 18867486
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCATTTTGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTGTCTCCATT
Flanking Amino Acid:
MDWSSMSLKAARR
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
76.3
0.59
1
71.4
38.2
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
46.8
-0.1
2
66.82
44.9

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038568
18862211 - 19014385
152175
ENSAPLT00000017763
18862211 - 19010855
148645