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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18868912_18869599_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18868912 - 18869599
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCGGC
5'SS Class:
major
3'SS Sequence:
TCTCTCAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TCTCTCTCAACC
Flanking Amino Acid:
RGGFPNTISIGGLFMRNTVQ
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1.1
61.8
43.5
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
66.5
0.37
0.9
59.4
35.8
Minor 5ss
37.2
-1.5
3.4
50.7
46
Minor BPS
63.8
0.41
1.6
71.76
39.3

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010383
18868653 - 19014385
145733