About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18869759_18903696_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18869759 - 18903696
Intron Length:
33938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTGTTTTTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTCACA
Flanking Amino Acid:
SSNSFSVTNAFCSQFSRGVY
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.3
0.57
1
76.9
37.3
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
63.3
0.41
1.9
80.03
36.1

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017763
18862211 - 19010855
148645
ENSAPLT00000010383
18868653 - 19014385
145733
ENSAPLT00000038568
18862211 - 19014385
152175
ENSAPLT00000018779
18869611 - 19014123
144513