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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18903937_18936346_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18903937 - 18936346
Intron Length:
32410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGTTTTTAAAT
Flanking Amino Acid:
KFVYLYDTERGFSILQAIME
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.7
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.4
0.75
0.7
76.9
25.2
Minor 5ss
40.2
-1.1
2.8
45.4
42.5
Minor BPS
65.8
0.57
1.4
76.07
41.1

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017763
18862211 - 19010855
148645
ENSAPLT00000010383
18868653 - 19014385
145733
ENSAPLT00000038568
18862211 - 19014385
152175
ENSAPLT00000018779
18869611 - 19014123
144513