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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18936535_18953406_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18936535 - 18953406
Intron Length:
16872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
VDRINTILEQVVILGKHSRG
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
81
0.7
0.8
76.8
30.8
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038568
18862211 - 19014385
152175
ENSAPLT00000018779
18869611 - 19014123
144513
ENSAPLT00000017763
18862211 - 19010855
148645
ENSAPLT00000010383
18868653 - 19014385
145733