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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18953461_18954960_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18953461 - 18954960
Intron Length:
1500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCCTTTTTACT
Flanking Amino Acid:
RGYHYMLANLGFTDIVLERV
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75.1
0.57
0.9
65.9
40.9
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
59.3
0.37
1.6
76.65
40

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010383
18868653 - 19014385
145733
ENSAPLT00000038568
18862211 - 19014385
152175
ENSAPLT00000018779
18869611 - 19014123
144513
ENSAPLT00000017763
18862211 - 19010855
148645