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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18959088_18960705_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18959088 - 18960705
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTGCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTTCTGTTTATT
Flanking Amino Acid:
GIDIERALKMVQVQGMTGNI
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
68.5
36.3
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
69.6
0.44
1.1
72.8
37.6
Minor 5ss
29.6
-2.3
3.5
35.6
42.2
Minor BPS
49
0
2.3
76.71
40

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018779
18869611 - 19014123
144513
ENSAPLT00000017763
18862211 - 19010855
148645
ENSAPLT00000010383
18868653 - 19014385
145733
ENSAPLT00000038568
18862211 - 19014385
152175