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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18960811_18962098_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18960811 - 18962098
Intron Length:
1288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATGAGATTAACA
Flanking Amino Acid:
YEMKAAGSRKSGYWNEYERF
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.2
0.75
0.7
79.1
26.6
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
49.3
-0
2.1
63.87
42.1

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017763
18862211 - 19010855
148645
ENSAPLT00000010383
18868653 - 19014385
145733
ENSAPLT00000038568
18862211 - 19014385
152175
ENSAPLT00000018779
18869611 - 19014123
144513