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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18963599_18972861_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18963599 - 18972861
Intron Length:
9263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TGTTCTGTAACT
Flanking Amino Acid:
NGMVGELVYGRADIAVAPLT
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
90.4
0.91
0.6
88.5
20.9
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
69
0.67
2
88.47
36.7

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017763
18862211 - 19010855
148645
ENSAPLT00000010383
18868653 - 19014385
145733
ENSAPLT00000038568
18862211 - 19014385
152175
ENSAPLT00000018779
18869611 - 19014123
144513