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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18972989_18973066_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18972989 - 18973066
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGTATTCT
5'SS Class:
major
3'SS Sequence:
GGCGTCAGCGTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CTTTGCTTACAT
Flanking Amino Acid:
MIKKPQKSKPVLFLVSRFSP
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1
63.5
37.2
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
50.1
0
1
43.3
37.4
Minor 5ss
42.4
-0.8
2.8
49.9
46.5
Minor BPS
53
0.17
2.2
76.73
45.7

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018779
18869611 - 19014123
144513