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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18997372_19010819_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18997372 - 19010819
Intron Length:
13448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCACGTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGTTATTT
Flanking Amino Acid:
GVATPKGSALRTPVNLAVLK
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.5
38.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
60.2
0.23
1.1
60.5
34.5
Minor 5ss
25.2
-2.8
3.2
31.3
42.9
Minor BPS
49.1
0.01
2.3
75.79
41.6

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018779
18869611 - 19014123
144513