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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_18998047_19010819_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18998047 - 19010819
Intron Length:
12773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCCTC
5'SS Class:
major
3'SS Sequence:
TTCCCACGTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGTTATTT
Flanking Amino Acid:
ECGSGGGDSKNSCKPCSIET
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.3
67.1
44.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
60.2
0.23
1.1
60.5
34.5
Minor 5ss
37.8
-1.4
3.1
51
45.6
Minor BPS
49.1
0.01
2.3
75.79
41.6

Associated Gene:

Gene:
GRIA3
Ensembl Gene ID:
ENSAPLG00000009833
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017763
18862211 - 19010855
148645