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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19027312_19027422_R

Intron Information:

Intron Rank:
37
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
19027312 - 19027422
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
ACA|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ATCCTGAATTTAC|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTTCCTTAATC
Flanking Amino Acid:
ESAGGKEEKKHHKSSDKHR*
Intron Amino Acid Position:
1575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
31
-1.1
3.3
47.3
43.8
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
37.4
-0.7
3.1
52.1
41.3
Minor 5ss
98
1.6
0.7
93.5
17.1
Minor BPS
92.8
1.32
0.7
94.44
20.6

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709
ENSAPLT00000031675
19027264 - 19078397
51134