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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19027500_19028153_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19027500 - 19028153
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATATTCTAAACT
Flanking Amino Acid:
MEKSSSGSKKESRHDKEKTE
Intron Amino Acid Position:
1550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82
0.72
1
86.9
31.1
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
68.6
0.66
1.6
82.83
38.2

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709
ENSAPLT00000031675
19027264 - 19078397
51134