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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19032109_19033622_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19032109 - 19033622
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TCTCCATTCATT
Flanking Amino Acid:
SSPSHSSTVKDNLNELKDSS
Intron Amino Acid Position:
1416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
1
88.3
26.6
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
85.2
0.79
0.8
80.1
31.8
Minor 5ss
35.7
-1.6
2.6
43.1
43.8
Minor BPS
51.9
0.14
2
74.4
42.6

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709
ENSAPLT00000031675
19027264 - 19078397
51134