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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19035368_19035642_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19035368 - 19035642
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACAAA
5'SS Class:
major
3'SS Sequence:
TCTCTTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTCTCTTCAAAC
Flanking Amino Acid:
KLEESTAEETEKLKEKSQGA
Intron Amino Acid Position:
1216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
69.2
36.9
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
73.5
0.53
0.9
70
34.2
Minor 5ss
38.2
-1.3
3
44.9
45.1
Minor BPS
61.8
0.35
1.6
71.74
39.5

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031675
19027264 - 19078397
51134
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709