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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19043827_19044632_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19043827 - 19044632
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTACTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTTTCCTGTACT
Flanking Amino Acid:
MTGGEQLKAEGGYFGQIRNT
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.5
29.5
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
71.2
0.48
1
65.3
40.8
Minor 5ss
41.1
-1
2.6
50.2
46.2
Minor BPS
73.4
0.82
1.8
93.48
34.2

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031675
19027264 - 19078397
51134
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709