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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19046668_19046921_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19046668 - 19046921
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
CTCTTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
GATTCATTCACA
Flanking Amino Acid:
DDTTISSWLQSLASFCGAVF
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
76.7
38.5
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
78.2
0.63
0.8
76.9
31.9
Minor 5ss
39.3
-1.2
2.8
50
39.9
Minor BPS
56.6
0.2
2
70.95
40.5

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031675
19027264 - 19078397
51134
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709