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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19047003_19047460_R

Intron Information:

Intron Rank:
17
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
19047003 - 19047460
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AACTCCACTAAAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
LTSLNYDVLAYCIIEALANP
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.3
64.4
42.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
56.2
0.14
1.1
53.8
34.7
Minor 5ss
98.3
1.62
0.6
94.6
16.9
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031675
19027264 - 19078397
51134
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709