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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19049157_19050807_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19049157 - 19050807
Intron Length:
1651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
QTIDRAKYIMKRLTKENVKP
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031675
19027264 - 19078397
51134
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709