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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19050910_19050996_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19050910 - 19050996
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
GMFKTFPYQYRYRLYGQWKN
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.4
37.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.2
0.68
1
79.3
38.2
Minor 5ss
30.1
-2.3
2.6
34.1
41.4
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031675
19027264 - 19078397
51134
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709