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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19056379_19059514_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19056379 - 19059514
Intron Length:
3136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTATGTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGGAAAG
Flanking Amino Acid:
KEKEEEKTEKPPDNQKLGLL
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
77.3
37.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.7
0.6
1
69.7
41.3
Minor 5ss
32.7
-2
3.1
40.9
45.4
Minor BPS
43.7
-0.6
2.3
58.48
42.9

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031675
19027264 - 19078397
51134
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709