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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19062415_19064071_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19062415 - 19064071
Intron Length:
1657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
TTCTTTTCCACT
Flanking Amino Acid:
LILENIKSLIGCFNLDPNRV
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
76.4
0.6
0.8
71.4
34.4
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
51.2
0.12
2
74.97
42.5

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019755
19027264 - 19078397
51134
ENSAPLT00000011119
19027264 - 19072972
45709
ENSAPLT00000031675
19027264 - 19078397
51134