About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19072579_19072906_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19072579 - 19072906
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTACT
Flanking Amino Acid:
MNISSLSNSSLQLCRTLSE
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.7
81.8
28.5
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
80.4
1.04
1.5
96.11
29.5

Associated Gene:

Gene:
THOC2
Ensembl Gene ID:
ENSAPLG00000010614
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011119
19027264 - 19072972
45709