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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19080334_19088591_F

Intron Information:

Intron Rank:
147848
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
19080334 - 19088591
Intron Length:
8258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGATGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTTTATCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.2
87.1
30
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
54.9
0.11
1.2
56.2
42.7
Minor 5ss
34.7
-1.7
2.7
42.8
44
Minor BPS
47.1
-0.1
2
69.87
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029577
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019734
19078418 - 19088600
10183