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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19114358_19114997_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19114358 - 19114997
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TACTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTATATTACTT
Flanking Amino Acid:
HLGGGCRDSTIEAAEVTVLP
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.4
0.8
0.7
84.8
29.7
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
53.4
0.19
1.9
77.29
39.4

Associated Gene:

Gene:
XIAP
Ensembl Gene ID:
ENSAPLG00000011039
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023052
19104700 - 19118996
14297
ENSAPLT00000011501
19105960 - 19118084
12125
ENSAPLT00000047673
19104700 - 19118084
13385