About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19115032_19116239_F


Intron Information:

Intron Rank:
5

Intron Class:
major-like

Intron Phase:
1

Intron Coordinates:
19115032 - 19116239

Intron Length:
1208

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATCTATT

5'SS Class:
weak_major

3'SS Sequence:
TTTCTTGTTTTAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TACTCAG

U12 Branch Point Sequence:
TCAGTCTCACTC

Flanking Amino Acid:
EAAEVTVLPKDDHLQNHLVQ

Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.3
0.67
1.1
83.5
35.1

Major BPS
63.2
0.33
1.5
71.6
36.4

Major PPT
85.4
0.8
0.8
84.8
30

Minor 5ss
61.6
0.39
2.1
77.4
37.4

Minor BPS
44.3
-0.4
1.8
50.19
41.2

Associated Gene:

Gene:
XIAP

Ensembl Gene ID:

Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

19104700 - 19118084
13385

19104700 - 19118996
14297

19105960 - 19118084
12125