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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19116441_19117890_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19116441 - 19117890
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACTTA
5'SS Class:
major
3'SS Sequence:
TTATTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AGTATGTTAACT
Flanking Amino Acid:
ETPNENPLEQDLSMEEKLRR
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
73.5
33.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.5
0.71
0.7
81.7
30
Minor 5ss
41.3
-1
3.1
55.3
48.9
Minor BPS
55.9
0.26
2.1
75.62
40.8

Associated Gene:

Gene:
XIAP
Ensembl Gene ID:
ENSAPLG00000011039
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023052
19104700 - 19118996
14297
ENSAPLT00000011501
19105960 - 19118084
12125
ENSAPLT00000047673
19104700 - 19118084
13385