Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19168274_19170041_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19168274 - 19170041

Intron Length:

1768

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTGCT

5'SS Class:

major

3'SS Sequence:

TTTAACCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TGTGTTTTAACC

Flanking Amino Acid:

PEIPTDFTLLQESETHFSSD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

72.9

36.6

Major BPS

89.7

0.98

0.7

89.9

Major PPT

0.7

0.9

74.1

36.1

Minor 5ss

37.5

-1.4

3.3

56.3

41.9

Minor BPS

69.3

0.59

1.3

74.15

36.9

Associated Gene:

Gene:

STAG2

Ensembl Gene ID:

ENSAPLG00000011118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026959

19168230 - 19206813

38584

ENSAPLT00000011721

19168230 - 19206813

38584