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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19170941_19173396_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19170941 - 19173396
Intron Length:
2456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTATTAAAAACT
Flanking Amino Acid:
VVKMGKSAMQSVVDDWIESY
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
90.8
0.92
0.7
89
27.5
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
47.9
-0
2.1
74.76
41.6

Associated Gene:

Gene:
STAG2
Ensembl Gene ID:
ENSAPLG00000011118
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026959
19168230 - 19206813
38584
ENSAPLT00000011721
19168230 - 19206813
38584