Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19174887_19176406_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19174887 - 19176406

Intron Length:

1520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTAAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TTTTTTTTAAAT

Flanking Amino Acid:

IRKMTEEFDEDSGDYPLTMA

Intron Amino Acid Position:

154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

82.1

25.8

Major BPS

87.3

0.93

0.8

36.5

Major PPT

79.4

0.66

0.9

78.4

33.9

Minor 5ss

39.6

-1.2

2.8

49.5

46.6

Minor BPS

79.5

1.2

92.62

Associated Gene:

Gene:

STAG2

Ensembl Gene ID:

ENSAPLG00000011118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026959

19168230 - 19206813

38584

ENSAPLT00000011721

19168230 - 19206813

38584