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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_19179470_19182791_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19179470 - 19182791
Intron Length:
3322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTCCGTATTT
Flanking Amino Acid:
LELLLQKRKELQENQDEIEN
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.8
0.83
0.7
84.7
30.1
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
49.5
0.05
2.3
72.14
45.2

Associated Gene:

Gene:
STAG2
Ensembl Gene ID:
ENSAPLG00000011118
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026959
19168230 - 19206813
38584
ENSAPLT00000011721
19168230 - 19206813
38584